5' and 3' in DNA sequences

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cmp08
Posts: 4
Joined: Sun Jan 14, 2007 3:06 pm

5' and 3' in DNA sequences

Post by cmp08 »

How can you tell which end of a DNA sequence is the 5' end?
carolinethorn
Former Expert
Posts: 393
Joined: Tue Sep 20, 2005 2:40 pm

Post by carolinethorn »

Conventionally sequences are written down starting with the 5' end so if you are looking at the sequence from a database or journal article it is most likely written 5' to 3'. If it is written in reverse it would probably be annotated as such.
If you tell us a little more about the sequence we can help you be sure.
Best of luck,
Caroline
Bob.Burkhart
Former Expert
Posts: 26
Joined: Tue Oct 03, 2006 12:04 pm

End Descriptions

Post by Bob.Burkhart »

If you look at the site:
http://web.mit.edu/esgbio/www/dogma/repl.html

You'll find that the 3' is the OH end of a strand and the 5' is the Phosphorous end-- at least that's how I read it.

Good luck.
Hope this helps,
-Bob-
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