Hi Aidan,
Like Tonya mentioned, although a microwave does give off very small amounts of radiation (not enough to harm you!), microwaving water does NOT make it radioactive...that would be very concerning. You're probably wondering why. microwave radiation is composed of electrical and magnetic energy that is absorbed by the water molecules. When water molecules gain energy they speed up. The temperature of a substance is actually determined by the movement of the molecules making up that substance. That's why when something is frozen, it becomes solid, and if it is heated enough it melts and liquidizes. The solid's molecules are vibrating, tightly together, while the liquid's molecules are moving about, bouncing off of each other. The more energy molecules gain from heat, or radiation etc.., the faster they move, and the warmer the substance becomes. So, when your water is exposed to microwave oven radiation it doesn't become radioactive. It simply gains energy by absorbing the radiation emitted, the water molecules speed up, and wow your cup now feels like the edge of a hot tub.
On a side note, I agree with Tonya. You could still totally do an experiment with this

although there is already data out there on the effects of varying water temperatures on plant growth you should go find out for yourself. For your hypothesis, what do you think? Why or why not do you think temperature affects plant growth? Check out the science buddies project guide if you're still a bit confused about constructing a hypothesis. Here's a link to the key info.....
https://www.sciencebuddies.org/science- ... esis.shtml
Your hypothesis could look something like this: "If I place plants in waters of varying temperature for (insert amount of time), then the plants growing at (insert temperature) will (insert predicted result)". Good luck on your experiment! You've piqued my interest! Please tell us how your results turn out and make sure to have a good number of controlled variables in your experiment to avoid any sketchy data.