Completed all aspects of experiement but cannot find/understand correlation with control data and final results/picture assessment. Can anybody help?
Sounds like you got a bit ahead of yourself. You really shouldn't "do" an experiment much less complete it until you have figured out how to analyze the results.
Without knowing exactly what you are having trouble with understanding, it is hard to give you specific help. Post back with a detailed question about your data and we can be more specific in our help.
The goal of the calibration steps was to determine the "noise floor" of your digital camera. The photo-electronic sensors used in cameras only have a limited range of light sensitivity. If there is less light than the "noise floor", then the image you get is a mixture of mostly the noise floor and some from the real image. If there is more light than the "noise floor", then the image you get is a mixture of mostly the real image plus some of the noise.
With most digital cameras the use CCD type sensors, the noise floor is typically a function of exposure time. The longer the exposure, the more noise that will be integrated into the pixel gray scale count. The average pixel density you obtained for a region of sky can be compared to the baseline you obtained to determine how bright or dark that section of sky was. It probably wasn't clear from the proceedure writeup that you should pick regions of the sky without the moon, bright stars, and any house or street lights so that their light contribution doesn't affect your dark sky measurements.
Another aspect that isn't covered in the short writeup is how shutter speed, ISO, and aperture correspond to absolute light levels. On a bright day near noon, an 18% reflectance neutral grey surface such as an asphalt parking lot (or a calibrated gray scale piece of paper) will be rendered near 18% when the aperture is f/16 and the shutter speed is 1/ISO (in the case of ISO 200, 1/200 sec). Since the clear blue sky is about 18% reflective in the blues, what this little piece of information gives you is a way to reference how dark the night sky is to the clear daytime sky. You can try out your digital camera by taking a picture of an asphalt parking lot or street in the middle of the day. If you are at ISO 200 1/200 sec f/16, I would expect your pixels to be approximately 46,46,46 (RGB) or 46 (gray scale) on a digital camera with 8 bit channels.
Hope this helps in general, but be sure to post back with any specific questions you have about the original proceedure or your data or what it means.