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computational biology
Moderators: AmyCowen, kgudger, MadelineB, Moderators
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deleted-133540
- Posts: 6
- Joined: Tue Apr 16, 2013 9:56 am
- Occupation: Student,College
- Project Question: Computational studies on microRNA cancer gene network
- Project Due Date: 30-4-2013
- Project Status: I am conducting my experiment
computational biology
How to find hubs in a network?
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deleted-116311
- Former Expert
- Posts: 26
- Joined: Mon Nov 19, 2012 4:38 pm
- Occupation: Graduate student
- Project Question: Science Fairs are Awesome!
- Project Due Date: n/a
- Project Status: Not applicable
Re: computational biology
Hi PoojaBhat,
I found a free review of biological network analysis:
http://genesdev.cshlp.org/content/21/9/ ... l.pdf+html
I hope that it helps.
Cheers,
Emily
I found a free review of biological network analysis:
http://genesdev.cshlp.org/content/21/9/ ... l.pdf+html
I hope that it helps.
Cheers,
Emily
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deleted-133540
- Posts: 6
- Joined: Tue Apr 16, 2013 9:56 am
- Occupation: Student,College
- Project Question: Computational studies on microRNA cancer gene network
- Project Due Date: 30-4-2013
- Project Status: I am conducting my experiment
Re: computational biology
Thank You so much!
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deleted-133540
- Posts: 6
- Joined: Tue Apr 16, 2013 9:56 am
- Occupation: Student,College
- Project Question: Computational studies on microRNA cancer gene network
- Project Due Date: 30-4-2013
- Project Status: I am conducting my experiment
Re: computational biology
Can you give me some project ideas which makes use of miRNA ids and their target genes for carcinoma?
It would be better if I can blend Computer science and Biological data.I want to extend the project and attach to the main project,so it must be related.
It would be better if I can blend Computer science and Biological data.I want to extend the project and attach to the main project,so it must be related.
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deleted-133540
- Posts: 6
- Joined: Tue Apr 16, 2013 9:56 am
- Occupation: Student,College
- Project Question: Computational studies on microRNA cancer gene network
- Project Due Date: 30-4-2013
- Project Status: I am conducting my experiment
Bioinformatics
How to find hubs in a network using cytoscape software?
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SciB
- Expert
- Posts: 2071
- Joined: Fri Feb 01, 2013 7:00 am
- Occupation: Retired molecular biologist, university researcher and teacher
- Project Question: I wish to join Scibuddies to be able to help students achieve the best science project possible and to understand the science behind it.
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Re: computational biology
Hi PoojaBhat,
You have an ambitious and exciting project. As you know, cancer is a multifactorial disease and one miRNA can reduce expression of many genes--not just those directly related to tumor growth, angiogenesis, metastasis, drug resistance, etc.
I don't understand exactly what it is you are trying to do, but here's a good paper in which the authors created dbases for miRNA profiles from healthy vs malignant tissue and attempted to create networks. Maybe you already have seen it, but the references in that paper could give you some ideas about what else needs to be done.
Reprogramming of miRNA networks in cancer and leukemia [http://genome.cshlp.org/content/20/5/589.full]
If you have any specific questions, please let us know.
SciB
You have an ambitious and exciting project. As you know, cancer is a multifactorial disease and one miRNA can reduce expression of many genes--not just those directly related to tumor growth, angiogenesis, metastasis, drug resistance, etc.
I don't understand exactly what it is you are trying to do, but here's a good paper in which the authors created dbases for miRNA profiles from healthy vs malignant tissue and attempted to create networks. Maybe you already have seen it, but the references in that paper could give you some ideas about what else needs to be done.
Reprogramming of miRNA networks in cancer and leukemia [http://genome.cshlp.org/content/20/5/589.full]
If you have any specific questions, please let us know.
SciB
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deleted-133540
- Posts: 6
- Joined: Tue Apr 16, 2013 9:56 am
- Occupation: Student,College
- Project Question: Computational studies on microRNA cancer gene network
- Project Due Date: 30-4-2013
- Project Status: I am conducting my experiment
Re: computational biology
Alright thank you 
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deleted-133540
- Posts: 6
- Joined: Tue Apr 16, 2013 9:56 am
- Occupation: Student,College
- Project Question: Computational studies on microRNA cancer gene network
- Project Due Date: 30-4-2013
- Project Status: I am conducting my experiment
Re: computational biology
Hello,
Could u please tell me few ideas about what can be done using software languages like php,sql,html,perl in bioinformatics?
Could u please tell me few ideas about what can be done using software languages like php,sql,html,perl in bioinformatics?